Publications

Proteomics characterization of mitochondrial‐derived vesicles under oxidative stress

Goutham Vasam, Rachel Nadeau, Virgilio J. J. Cadete, Mathieu Lavallée‐Adam, Keir J. Menzies, Yan Burelle FASEB J. 2021 Apr; 35(4): e21278. Published online 2021 Mar 26. doi: 10.1096/fj.202002151R PMCID: PMC8252493

 

Vtc5 Is Localized to the Vacuole Membrane by the Conserved AP-3 Complex to Regulate Polyphosphate Synthesis in Budding Yeast

Amanda Bentley-DeSousa, Michael Downey

mBio. 2021 Sep-Oct; 12(5): e00994-21. Published online 2021 Sep 21. doi: 10.1128/mBio.00994-21

Correction in: mBio. 2021 Nov-Dec; 12(6): e02997-21.  PMCID: PMC8510523

 

Identification of novel lipid droplet factors that regulate lipophagy and cholesterol efflux in macrophage foam cells

Sabrina Robichaud, Garrett Fairman, Viyashini Vijithakumar, Esther Mak, David P. Cook, Alexander R. Pelletier, Sylvain Huard, Barbara C. Vanderhyden, Daniel Figeys, Mathieu Lavallée-Adam, Kristin Baetz, Mireille Ouimet

Autophagy. 2021; 17(11): 3671–3689. Published online 2021 Feb 26. doi: 10.1080/15548627.2021.1886839PMCID: PMC8632324

 

A yeast chemogenomic screen identifies pathways that modulate adipic acid toxicity

Eugene Fletcher, Kevin Mercurio, Elizabeth A. Walden, Kristin Baetz

iScience. 2021 Apr 23; 24(4): 102327. Published online 2021 Mar 18. doi: 10.1016/j.isci.2021.102327PMCID: PMC8050732

 

Grx2 Regulates Skeletal Muscle Mitochondrial Structure and Autophagy

Ava Liaghati, Chantal A. Pileggi, Gaganvir Parmar, David A. Patten, Nina Hadzimustafic, Alexanne Cuillerier, Keir J. Menzies, Yan Burelle, Mary-Ellen Harper

Front Physiol. 2021; 12: 604210. Published online 2021 Mar 5. doi: 10.3389/fphys.2021.604210PMCID: PMC7982873

 

Naked mole-rat brown fat thermogenesis is diminished during hypoxia through a rapid decrease in UCP1

Hang Cheng, Rajaa Sebaa, Nikita Malholtra, Baptiste Lacoste, Ziyad El Hankouri, Alexia Kirby, Nigel C. Bennett, Barry van Jaarsveld, Daniel W. Hart, Glenn J. Tattersall, Mary-Ellen Harper, Matthew E. Pamenter

Nat Commun. 2021; 12: 6801. Published online 2021 Nov 23. doi: 10.1038/s41467-021-27170-2PMCID: PMC8610999

 

Applications of Extracellular Vesicles in Triple-Negative Breast Cancer

Frederic St-Denis-Bissonnette, Rachil Khoury, Karan Mediratta, Sara El-Sahli, Lisheng Wang, Jessie R. Lavoie  Cancers (Basel) 2022 Jan; 14(2): 451. Published online 2022 Jan 17. doi: 10.3390/cancers14020451 PMCID: PMC8773485

  

Ebola virus triggers receptor tyrosine kinase-dependent signaling to promote the delivery of viral particles to entry-conducive intracellular compartments

Corina M. Stewart, Alexandra Phan, Yuxia Bo, Nicholas D. LeBlond, Tyler K. T. Smith, Geneviève Laroche, Patrick M. Giguère, Morgan D. Fullerton, Martin Pelchat, Darwyn Kobasa, Marceline Côté

PLoS Pathog. 2021 Jan; 17(1): e1009275. Published online 2021 Jan 29. doi: 10.1371/journal.ppat.1009275PMCID: PMC7875390

 

Global analysis of Saccharomyces cerevisiae growth in mucin

Kevin Mercurio, Dylan Singh, Elizabeth Walden, Kristin Baetz

G3 (Bethesda) 2021 Nov; 11(11): jkab294. Published online 2021 Aug 18. doi: 10.1093/g3journal/jkab294PMCID: PMC8527512

 

Relative Ratios of Human Seasonal Coronavirus Antibodies Predict the Efficiency of Cross-Neutralization of SARS-CoV-2 Spike Binding to ACE2

Yannick Galipeau, Vinayakumar Siragam, Geneviève Laroche, Erika Marion, Matthew Greig, Michaeline McGuinty, Ronald A Booth, Yves Durocher, Miroslava Cuperlovic-Culf, Steffany A.L. Bennett, Angela M. Crawley, Patrick M. Giguère, Curtis Cooper, Marc-André Langlois

EBioMedicine. 2021 Dec; 74: 103700. Published online 2021 Nov 30. doi: 10.1016/j.ebiom.2021.103700PMCID: PMC8629681

 

Retraction Note to: Differential regulation of wild-type and mutant alpha-synuclein binding to synaptic membranes by cytosolic factors

Sabine Wislet-Gendebien, Naomi P. Visanji, Shawn N. Whitehead, Diana Marsilio, Weimin Hou, Daniel Figeys, Paul E. Fraser, Steffany A. L. Bennett, Anurag Tandon

BMC Neurosci. 2021; 22: 40. Published online 2021 Jun 3. doi: 10.1186/s12868-021-00644-1Retracts: BMC Neurosci. 2008; 9: 92.PMCID: PMC8173967

  

Identification of pannexin 1-regulated genes, interactome, and pathways in rhabdomyosarcoma and its tumor inhibitory interaction with AHNAKXiao Xiang, Stéphanie Langlois, Marie-Eve St-Pierre, Anna Blinder, Philippe Charron, Tyson E. Graber, Stephanie L. Fowler, Stephen D. Baird, Steffany A. L. Bennett, Tommy Alain, Kyle N. Cowan Oncogene. 2021; 40(10): 1868–1883. Published online 2021 Feb 9. doi: 10.1038/s41388-020-01623-2 PMCID: PMC7946643

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Serine palmitoyltransferase assembles at ER–mitochondria contact sites

Mari J Aaltonen, Irina Alecu, Tim König, Steffany AL Bennett, Eric A Shoubridge

Life Sci Alliance. 2022 Feb; 5(2): e202101278. Published online 2021 Nov 16. doi: 10.26508/lsa.202101278 PMCID: PMC8605320

 

 

Metabolomics and computational analysis of the role of monoamine oxidase activity in delirium and SARS-COV-2 infection

Miroslava Cuperlovic-Culf, Emma L. Cunningham, Hossen Teimoorinia, Anuradha Surendra, Xiaobei Pan, Steffany A. L. Bennett, Mijin Jung, Bernadette McGuiness, Anthony Peter Passmore, David Beverland, Brian D. Green Sci Rep. 2021; 11: 10629. Published online 2021 May 20. doi: 10.1038/s41598-021-90243-1 PMCID: PMC8138024

 

Zebrafish Cancer Predisposition Models

Kim Kobar, Keon Collett, Sergey V. Prykhozhij, Jason N. Berman

Front Cell Dev Biol. 2021; 9: 660069. Published online 2021 Apr 27. doi: 10.3389/fcell.2021.660069 PMCID: PMC8112447

 

 

Six1 promotes skeletal muscle thyroid hormone response through regulation of the MCT10 transporter

John Girgis, Dabo Yang, Imane Chakroun, Yubing Liu, Alexandre Blais

Skelet Muscle. 2021; 11: 26. Published online 2021 Nov 19. doi: 10.1186/s13395-021-00281-6 PMCID:    PMC8607597

 

 

Chromatin and transcription factor profiling in rare stem cell populations using CUT&Tag

Yuefeng Li, Kiran Nakka, Thomas Olender, Philippe Gingras-Gelinas, Matthew Man-Kin Wong, Daniel C.L. Robinson, Hina Bandukwala, Carmen G. Palii, Odile Neyret, Marjorie Brand, Alexandre Blais, F. Jeffrey Dilworth

STAR Protoc. 2021 Sep 17; 2(3): 100751. Published online 2021 Aug 19. doi: 10.1016/j.xpro.2021.100751 PMCID:  PMC8384913

 

 

Muscle Enriched Lamin Interacting Protein (Mlip) Binds Chromatin and Is Required for Myoblast Differentiation

Elmira Ahmady, Alexandre Blais, Patrick G. Burgon

Cells. 2021 Mar; 10(3): 615. Published online 2021 Mar 10. doi: 10.3390/cells10030615  PMCID: PMC7998221

 

 

Epigenetic plasticity of erythroid progenitors

Marjorie Brand

Blood. 2021 Nov 4; 138(18): 1646–1648. doi: 10.1182/blood.2021013087 PMCID: PMC8569413

 

 

Negative elongation factor regulates muscle progenitor expansion for efficient myofiber repair and stem cell pool repopulation

Daniel C.L. Robinson, Morten Ritso, Geoffrey M. Nelson, Zeinab Mokhtari, Kiran Nakka, Hina Bandukwala, Seth R. Goldman, Peter J. Park, Rémi Mounier, Bénédicte Chazaud, Marjorie Brand, Michael A. Rudnicki, Karen Adelman, F. Jeffrey Dilworth

Dev Cell. Author manuscript; available in PMC 2021 Oct 5.

Published in final edited form as: Dev Cell. 2021 Apr 5; 56(7): 1014–1029.e7. Published online 2021 Mar 17. doi: 10.1016/j.devcel.2021.02.025 PMCID: PMC8357161

 

Immunological and pathological outcomes of SARS-CoV-2 challenge following formalin-inactivated vaccine in ferrets and rhesus macaques

Kevin R. Bewley, Karen Gooch, Kelly M. Thomas, Stephanie Longet, Nathan Wiblin, Laura Hunter, Kin Chan, Phillip Brown, Rebecca A. Russell, Catherine Ho, Gillian Slack, Holly E. Humphries, Leonie Alden, Lauren Allen, Marilyn Aram, Natalie Baker, Emily Brunt, Rebecca Cobb, Susan Fotheringham, Debbie Harris, Chelsea Kennard, Stephanie Leung, Kathryn Ryan, Howard Tolley, Nadina Wand, Andrew White, Laura Sibley, Charlotte Sarfas, Geoff Pearson, Emma Rayner, Xiaochao Xue, Teresa Lambe, Sue Charlton, Sarah Gilbert, Quentin J. Sattentau, Fergus Gleeson, Yper Hall, Simon Funnell, Sally Sharpe, Francisco J. Salguero, Andrew Gorringe, Miles Carroll

Sci Adv. 2021 Sep; 7(37): eabg7996. Published online 2021 Sep 10. doi: 10.1126/sciadv.abg7996 PMCID: PMC8442907

 

 

Comparison of SARS-CoV-2 indirect and direct RT-qPCR detection methods

Joel D. Pearson, Daniel Trcka, Suying Lu, Sharon J. Hyduk, Mark Jen, Marie-Ming Aynaud, J. Javier Hernández, Philippos Peidis, Miriam Barrios-Rodiles, Kin Chan, Jim Woodgett, Tony Mazzulli, Liliana Attisano, Laurence Pelletier, Myron I. Cybulsky, Jeffrey L. Wrana, Rod Bremner

Virol J. 2021; 18: 99. Published online 2021 May 17. doi: 10.1186/s12985-021-01574-4 PMCID: PMC8127261

 

 

A multiplexed, next generation sequencing platform for high-throughput detection of SARS-CoV-2

Marie-Ming Aynaud, J. Javier Hernandez, Seda Barutcu, Ulrich Braunschweig, Kin Chan, Joel D. Pearson, Daniel Trcka, Suzanna L. Prosser, Jaeyoun Kim, Miriam Barrios-Rodiles, Mark Jen, Siyuan Song, Jess Shen, Christine Bruce, Bryn Hazlett, Susan Poutanen, Liliana Attisano, Rod Bremner, Benjamin J. Blencowe, Tony Mazzulli, Hong Han, Laurence Pelletier, Jeffrey L. Wrana

Nat Commun. 2021; 12: 1405. Published online 2021 Mar 3. doi: 10.1038/s41467-021-21653-y PMCID: PMC7930244

 

 

Strong humoral immune responses against SARS-CoV-2 Spike after BNT162b2 mRNA vaccination with a 16-week interval between doses

Alexandra Tauzin, Shang Yu Gong, Guillaume Beaudoin-Bussières, Dani Vézina, Romain Gasser, Lauriane Nault, Lorie Marchitto, Mehdi Benlarbi, Debashree Chatterjee, Manon Nayrac, Annemarie Laumaea, Jérémie Prévost, Marianne Boutin, Gérémy Sannier, Alexandre Nicolas, Catherine Bourassa, Gabrielle Gendron-Lepage, Halima Medjahed, Guillaume Goyette, Yuxia Bo, Josée Perreault, Laurie Gokool, Chantal Morrisseau, Pascale Arlotto, Renée Bazin, Mathieu Dubé, Gaston De Serres, Nicholas Brousseau, Jonathan Richard, Roberta Rovito, Marceline Côté, Cécile Tremblay, Giulia C. Marchetti, Ralf Duerr, Valérie Martel-Laferrière, Daniel E. Kaufmann, Andrés Finzi

Cell Host Microbe. 2022 Jan 12; 30(1): 97–109.e5. Published online 2021 Dec 3. doi: 10.1016/j.chom.2021.12.004 PMCID: PMC8639412

 

 

Antiviral Potential of the Antimicrobial Drug Atovaquone against SARS-CoV-2 and Emerging Variants of Concern

Madalina Elena Carter-Timofte, Rozanne Arulanandam, Naziia Kurmasheva, Kathy Fu, Geneviève Laroche, Zaid Taha, Demi van der Horst, Lena Cassin, Renée M. van der Sluis, Enrico Palermo, Daniele Di Carlo, David Jacobs, Glib Maznyi, Taha Azad, Ragunath Singaravelu, Fanghui Ren, Anne Louise Hansen, Manja Idorn, Christian K. Holm, Martin R. Jakobsen, Julien van Grevenynghe, John Hiscott, Søren R. Paludan, John C. Bell, Jean Seguin, Luc A. Sabourin, Marceline Côté, Jean-Simon Diallo, Tommy Alain, David Olagnier

ACS Infect Dis. 2021 Oct 18 : acsinfecdis.1c00278. Published online 2021 Oct 18. doi: 10.1021/acsinfecdis.1c00278 PMCID: PMC8547501

 

 

Contribution of single mutations to selected SARS-CoV-2 emerging variants spike antigenicity

Shang Yu Gong, Debashree Chatterjee, Jonathan Richard, Jérémie Prévost, Alexandra Tauzin, Romain Gasser, Yuxia Bo, Dani Vézina, Guillaume Goyette, Gabrielle Gendron-Lepage, Halima Medjahed, Michel Roger, Marceline Côté, Andrés Finzi

Virology. 2021 Nov; 563: 134–145. Published online 2021 Sep 11. doi: 10.1016/j.virol.2021.09.001 PMCID: PMC8433594

 

 

Antigenicity of the Mu (B.1.621) and A.2.5 SARS-CoV-2 Spikes

Debashree Chatterjee, Alexandra Tauzin, Annemarie Laumaea, Shang Yu Gong, Yuxia Bo, Aurélie Guilbault, Guillaume Goyette, Catherine Bourassa, Gabrielle Gendron-Lepage, Halima Medjahed, Jonathan Richard, Sandrine Moreira, Marceline Côté, Andrés Finzi

Viruses. 2022 Jan; 14(1): 144. Published online 2022 Jan 14. doi: 10.3390/v14010144 PMCID: PMC8780535

 

 

Structural basis and mode of action for two broadly neutralizing antibodies against SARS-CoV-2 emerging variants of concern

Wenwei Li, Yaozong Chen, Jérémie Prévost, Irfan Ullah, Maolin Lu, Shang Yu Gong, Alexandra Tauzin, Romain Gasser, Dani Vézina, Sai Priya Anand, Guillaume Goyette, Debashree Chaterjee, Shilei Ding, William D. Tolbert, Michael W. Grunst, Yuxia Bo, Shijian Zhang, Jonathan Richard, Fei Zhou, Rick K. Huang, Lothar Esser, Allison Zeher, Marceline Côté, Priti Kumar, Joseph Sodroski, Di Xia, Pradeep D. Uchil, Marzena Pazgier, Andrés Finzi, Walther Mothes

Cell Rep. 2022 Jan 11; 38(2): 110210. Published online 2021 Dec 15. doi: 10.1016/j.celrep.2021.110210 PMCID: PMC8673750

 

 

Interferon-Induced HERC5 Inhibits Ebola Virus Particle Production and Is Antagonized by Ebola Glycoprotein

Ermela Paparisto, Nina R. Hunt, Daniel S. Labach, Macon D. Coleman, Eric J. Di Gravio, Mackenzie J. Dodge, Nicole J. Friesen, Marceline Côté, Andreas Müller, Thomas Hoenen, Stephen D. Barr

Cells. 2021 Sep; 10(9): 2399. Published online 2021 Sep 13. doi: 10.3390/cells10092399 PMCID: PMC8472148

 

 

Structural Basis and Mode of Action for Two Broadly Neutralizing Antibodies Against SARS-CoV-2 Emerging Variants of Concern

Wenwei Li, Yaozong Chen, Jérémie Prévost, Irfan Ullah, Maolin Lu, Shang Yu Gong, Alexandra Tauzin, Romain Gasser, Dani Vézina, Sai Priya Anand, Guillaume Goyette, Debashree Chaterjee, Shilei Ding, William D. Tolbert, Michael W. Grunst, Yuxia Bo, Shijian Zhang, Jonathan Richard, Fei Zhou, Rick K. Huang, Lothar Esser, Allison Zeher, Marceline Côté, Priti Kumar, Joseph Sodroski, Di Xia, Pradeep D. Uchil, Marzena Pazgier, Andrés Finzi, Walther Mothes

Version 1. bioRxiv. Preprint. 2021 Aug 3. doi: 10.1101/2021.08.02.454546 PMCID: PMC8351775

 

 

Identification of a High-Frequency Intrahost SARS-CoV-2 Spike Variant with Enhanced Cytopathic and Fusogenic Effects

Lynda Rocheleau, Geneviève Laroche, Kathy Fu, Corina M. Stewart, Abdulhamid O. Mohamud, Marceline Côté, Patrick M. Giguère, Marc-André Langlois, Martin Pelchat

mBio. 2021 May-Jun; 12(3): e00788-21. Published online 2021 Jun 29. doi: 10.1128/mBio.00788-21 PMCID:  PMC8262852

 

 

Potential Differences in Cleavage of the S Protein and Type 1 Interferon Together Control Human Coronavirus Infection, Propagation, and Neuropathology within the Central Nervous System

Alain Le Coupanec, Marc Desforges, Benedikt Kaufer, Philippe Dubeau, Marceline Côté, Pierre J. Talbot

J Virol. 2021 May; 95(10): e00140-21. Prepublished online 2021 Feb 24. Published online 2021 Apr 26. doi: 10.1128/JVI.00140-21 PMCID: PMC8139659

 

Dynamic sumoylation of promoter-bound general transcription factors facilitates transcription by RNA polymerase II

Mohammad S. Baig, Yimo Dou, Benjamin G. Bergey, Russell Bahar, Justin M. Burgener, Marjan Moallem, James B. McNeil, Akhi Akhter, Giovanni L. Burke, Veroni S. Sri Theivakadadcham, Patricia Richard, Damien D’Amours, Emanuel Rosonina

PLoS Genet. 2021 Sep; 17(9): e1009828. Published online 2021 Sep 29. doi: 10.1371/journal.pgen.1009828 PMCID: PMC8505008

  

The Bromodomains of the mammalian SWI/SNF (mSWI/SNF) ATPases Brahma (BRM) and Brahma Related Gene 1 (BRG1) promote chromatin interaction and are critical for skeletal muscle differentiation

Tapan Sharma, Daniel C L Robinson, Hanna Witwicka, F Jeffrey Dilworth, Anthony N Imbalzano

Nucleic Acids Res. 2021 Aug 20; 49(14): 8060–8077. Published online 2021 Jul 21. doi: 10.1093/nar/gkab617 PMCID: PMC8373147

 

HIRA stabilizes skeletal muscle lineage identity

Joana Esteves de Lima, Reem Bou Akar, Léo Machado, Yuefeng Li, Bernadette Drayton-Libotte, F. Jeffrey Dilworth, Frédéric Relaix

Nat Commun. 2021; 12: 3450. Published online 2021 Jun 8. doi: 10.1038/s41467-021-23775-9 PMCID: PMC8187366

 Targeting Polyphosphate Kinases in the Fight against Pseudomonas aeruginosa

Kanchi Baijal, Michael Downey

mBio. 2021 Jul-Aug; 12(4): e01477-21. Published online 2021 Aug 3. doi: 10.1128/mBio.01477-21 PMCID:  PMC8406150

 

 Erratum for Bentley-DeSousa and Downey, “Vtc5 Is Localized to the Vacuole Membrane by the Conserved AP-3 Complex To Regulate Polyphosphate Synthesis in Budding Yeast”

Amanda Bentley-DeSousa, Michael Downey

mBio. 2021 Nov-Dec; 12(6): e02997-21. Published online 2021 Nov 2. doi: 10.1128/mBio.02997-21

Corrects: mBio. 2021 Sep-Oct; 12(5): e00994-21. PMCID: PMC8561339

 

Examining the Effects of an Anti-Salmonella Bacteriophage Preparation, BAFASAL®, on Ex-Vivo Human Gut Microbiome Composition and Function Using a Multi-Omics Approach

Janice Mayne, Xu Zhang, James Butcher, Krystal Walker, Zhibin Ning, Ewelina Wójcik, Jarosław Dastych, Alain Stintzi, Daniel Figeys

Viruses. 2021 Sep; 13(9): 1734. Published online 2021 Aug 31. doi: 10.3390/v13091734 PMCID: PMC8473076

 

Propionic acid disrupts endocytosis, cell cycle, and cellular respiration in yeast

Emma W. Micalizzi, Ashkan Golshani, Myron L. Smith

BMC Res Notes. 2021; 14: 335. Published online 2021 Aug 28. doi: 10.1186/s13104-021-05752-z PMCID: PMC8403364

 

The conserved Tpk1 regulates non-homologous end joining double-strand break repair by phosphorylation of Nej1, a homolog of the human XLF

Matthew Jessulat, Shahreen Amin, Mohsen Hooshyar, Ramy Malty, Mohamed Taha Moutaoufik, Mara Zilocchi, Zoe Istace, Sadhna Phanse, Hiroyuki Aoki, Katayoun Omidi, Daniel Burnside, Bahram Samanfar, Khaled A Aly, Ashkan Golshani, Mohan Babu

Nucleic Acids Res. 2021 Aug 20; 49(14): 8145–8160. Published online 2021 Jul 9. doi: 10.1093/nar/gkab585 PMCID: PMC8373142

  

Manganese-Induced Neurotoxicity through Impairment of Cross-Talk Pathways in Human Neuroblastoma Cell Line SH-SY5Y Differentiated with Retinoic Acid

Raúl Bonne Hernández, Nadja C. de Souza-Pinto, Jos Kleinjans, Marcel van Herwijnen, Jolanda Piepers, Houman Moteshareie, Daniel Burnside, Ashkan Golshani

Toxics. 2021 Dec; 9(12): 348. Published online 2021 Dec 9. doi: 10.3390/toxics9120348 PMCID: PMC8704659

 

Dietary Cocoa Flavanols Enhance Mitochondrial Function in Skeletal Muscle and Modify Whole-Body Metabolism in Healthy Mice

Frédéric Nicolas Daussin, Alexane Cuillerier, Julianne Touron, Samir Bensaid, Bruno Melo, Ali Al Rewashdy, Goutham Vasam, Keir J. Menzies, Mary-Ellen Harper, Elsa Heyman, Yan Burelle

Nutrients. 2021 Oct; 13(10): 3466. Published online 2021 Sep 29. doi: 10.3390/nu13103466 PMCID: PMC8538722

  

SMN Depleted Mice Offer a Robust and Rapid Onset Model of Nonalcoholic Fatty Liver Disease

Marc-Olivier Deguise, Chantal Pileggi, Yves De Repentigny, Ariane Beauvais, Alexandra Tierney, Lucia Chehade, Jean Michaud, Maica Llavero-Hurtado, Douglas Lamont, Abdelmadjid Atrih, Thomas M. Wishart, Thomas H. Gillingwater, Bernard L. Schneider, Mary-Ellen Harper, Simon H. Parson, Rashmi Kothary

Cell Mol Gastroenterol Hepatol. 2021; 12(1): 354–377.e3. Published online 2021 Feb 2. doi: 10.1016/j.jcmgh.2021.01.019 PMCID: PMC8257458

 

Nuclear HKII-P-p53 (Ser15) Interaction is a Prognostic Biomarker for Chemoresponsiveness and Glycolytic Regulation in Epithelial Ovarian Cancer

Chae Young Han, David A. Patten, Se Ik Kim, Jung Jin Lim, David W. Chan, Michelle K. Y. Siu, Youngjin Han, Euridice Carmona, Robin J. Parks, Cheol Lee, Li-Jun Di, Zhen Lu, Karen K. L. Chan, Ja-Lok Ku, Elizabeth A. Macdonald, Barbara C. Vanderhyden, Anne-Marie Mes-Masson, Hextan Y. S. Ngan, Annie N. Y. Cheung, Yong Sang Song, Robert C. Bast, Jr., Mary-Ellen Harper, Benjamin K. Tsang

Cancers (Basel) 2021 Jul; 13(14): 3399. Published online 2021 Jul 7. doi: 10.3390/cancers13143399 PMCID: PMC8306240

 

Exercise training and diet-induced weight loss increase markers of hepatic bile acid (BA) synthesis and reduce serum total BA concentrations in obese women

Kelly E. Mercer, Adrianna Maurer, Lindsay M. Pack, Kikumi Ono-Moore, Beverly J. Spray, Caitlin Campbell, Carol J. Chandler, Dustin Burnett, Elaine Souza, Gretchen Casazza, Nancy Keim, John Newman, Gary Hunter, Jose Fernadez, W. Timothy Garvey, Mary-Ellen Harper, Charles Hoppel, Sean H. Adams, John Thyfault

Am J Physiol Endocrinol Metab. 2021 May 1; 320(5): E864–E873. Published online 2021 Mar 1. doi: 10.1152/ajpendo.00644.2020 PMCID: PMC8238126

  

PIGNON: a protein–protein interaction-guided functional enrichment analysis for quantitative proteomics

Rachel Nadeau, Anastasiia Byvsheva, Mathieu Lavallée-Adam

BMC Bioinformatics. 2021; 22: 302. Published online 2021 Jun 4. doi: 10.1186/s12859-021-04042-6 PMCID: PMC8178832

 

PharmacoDB 2.0: improving scalability and transparency of in vitro pharmacogenomics analysis

Nikta Feizi, Sisira Kadambat Nair, Petr Smirnov, Gangesh Beri, Christopher Eeles, Parinaz Nasr Esfahani, Minoru Nakano, Denis Tkachuk, Anthony Mammoliti, Evgeniya Gorobets, Arvind Singh Mer, Eva Lin, Yihong Yu, Scott Martin, Marc Hafner, Benjamin Haibe-Kains

Nucleic Acids Res. 2022 Jan 7; 50(D1): D1348–D1357. Published online 2021 Nov 26. doi: 10.1093/nar/gkab1084 PMCID: PMC8728279

 .

Orchestrating and sharing large multimodal data for transparent and reproducible research

Anthony Mammoliti, Petr Smirnov, Minoru Nakano, Zhaleh Safikhani, Christopher Eeles, Heewon Seo, Sisira Kadambat Nair, Arvind S. Mer, Ian Smith, Chantal Ho, Gangesh Beri, Rebecca Kusko, Massive Analysis Quality Control (MAQC) Society Board of Directors, Eva Lin, Yihong Yu, Scott Martin, Marc Hafner, Benjamin Haibe-Kains

Nat Commun. 2021; 12: 5797. Published online 2021 Oct 4. doi: 10.1038/s41467-021-25974-w PMCID: PMC8490371

  

Biological and therapeutic implications of a unique subtype of NPM1 mutated AML

Arvind Singh Mer, Emily M. Heath, Seyed Ali Madani Tonekaboni, Nergiz Dogan-Artun, Sisira Kadambat Nair, Alex Murison, Laura Garcia-Prat, Liran Shlush, Rose Hurren, Veronique Voisin, Gary D. Bader, Corey Nislow, Mattias Rantalainen, Soren Lehmann, Mark Gower, Cynthia J. Guidos, Mathieu Lupien, John E. Dick, Mark D. Minden, Aaron D. Schimmer, Benjamin Haibe-Kains

Nat Commun. 2021; 12: 1054. Published online 2021 Feb 16. doi: 10.1038/s41467-021-21233-0 PMCID: PMC7886883

  

Proteogenomic Characterization of Pancreatic Ductal Adenocarcinoma

Liwei Cao, Chen Huang, Daniel Cui Zhou, Yingwei Hu, T. Mamie Lih, Sara R. Savage, Karsten Krug, David J. Clark, Michael Schnaubelt, Lijun Chen, Felipe da Veiga Leprevost, Rodrigo Vargas Eguez, Weiming Yang, Jianbo Pan, Bo Wen, Yongchao Dou, Wen Jiang, Yuxing Liao, Zhiao Shi, Nadezhda V. Terekhanova, Song Cao, Rita Jui-Hsien Lu, Yize Li, Ruiyang Liu, Houxiang Zhu, Peter Ronning, Yige Wu, Matthew A. Wyczalkowski, Hariharan Easwaran, Ludmila Danilova, Arvind Singh Mer, Seungyeul Yoo, Joshua M. Wang, Wenke Liu, Benjamin Haibe-Kains, Mathangi Thiagarajan, Scott D. Jewell, Galen Hostetter, Chelsea J. Newton, Qing Kay Li, Michael H. Roehrl, David Fenyö, Pei Wang, Alexey I. Nesvizhskii, D. R. Mani, Gilbert S. Omenn, Emily S. Boja, Mehdi Mesri, Ana I. Robles, Henry Rodriguez, Oliver F. Bathe, Daniel W Chan, Ralph H. Hruban, Li Ding, Bing Zhang, Hui Zhang, Clinical Proteomic Tumor Analysis Consortium

Cell. Author manuscript; available in PMC 2021 Dec 8.

Published in final edited form as: Cell. 2021 Sep 16; 184(19): 5031–5052.e26. doi: 10.1016/j.cell.2021.08.023 PMCID: PMC8654574

  

Highlights from the 16th International Society for Computational Biology Student Council Symposium 2020

Wim L. Cuypers, Handan Melike Dönertaş, Jasleen K. Grewal, Nazeefa Fatima, Chase Donnelly, Arvind Singh Mer, Spencer Krieger, Bart Cuypers, Farzana Rahman

Version 1. F1000Res. 2021; 10: ISCB Comm J-443. Published online 2021 Jun 4. doi: 10.12688/f1000research.53408.1 PMCID: PMC8182693

 

Nucleotide Analogues Bearing a C2′ or C3′-Stereogenic All-Carbon Quaternary Center as SARS-CoV-2 RdRp Inhibitors

Amarender Manchoju, Renaud Zelli, Gang Wang, Carla Eymard, Adrian Oo, Mona Nemer, Michel Prévost, Baek Kim, Yvan Guindon

Molecules. 2022 Jan; 27(2): 564. Published online 2022 Jan 17. doi: 10.3390/molecules27020564 PMCID: PMC8781509

 

WACS: improving ChIP-seq peak calling by optimally weighting controls

Aseel Awdeh, Marcel Turcotte, Theodore J. Perkins

BMC Bioinformatics. 2021; 22: 69. Published online 2021 Feb 15. doi: 10.1186/s12859-020-03927-2 PMCID: PMC7885521

 

FHR-5 Serum Levels and CFHR5 Genetic Variations in Patients With Immune Complex-Mediated Membranoproliferative Glomerulonephritis and C3-Glomerulopathy

Nóra Garam, Marcell Cserhalmi, Zoltán Prohászka, Ágnes Szilágyi, Nóra Veszeli, Edina Szabó, Barbara Uzonyi, Attila Iliás, Christof Aigner, Alice Schmidt, Martina Gaggl, Gere Sunder-Plassmann, Dóra Bajcsi, Jürgen Brunner, Alexandra Dumfarth, Daniel Cejka, Stefan Flaschberger, Hana Flögelova, Ágnes Haris, Ágnes Hartmann, Andreas Heilos, Thomas Mueller, Krisztina Rusai, Klaus Arbeiter, Johannes Hofer, Dániel Jakab, Mária Sinkó, Erika Szigeti, Csaba Bereczki, Viktor Janko, Kata Kelen, György S. Reusz, Attila J. Szabó, Nóra Klenk, Krisztina Kóbor, Nika Kojc, Maarten Knechtelsdorfer, Mario Laganovic, Adrian Catalin Lungu, Anamarija Meglic, Rina Rus, Tanja Kersnik Levart, Ernesta Macioniene, Marius Miglinas, Anna Pawłowska, Tomasz Stompór, Ludmila Podracka, Michael Rudnicki, Gert Mayer, Romana Rysava, Jana Reiterova, Marijan Saraga, Tomáš Seeman, Jakub Zieg, Eva Sládková, Natasa Stajic, Tamás Szabó, Andrei Capitanescu, Simona Stancu, Miroslav Tisljar, Kresimir Galesic, András Tislér, Inga Vainumäe, Martin Windpessl, Tomas Zaoral, Galia Zlatanova, Mihály Józsi, Dorottya Csuka

Front Immunol. 2021; 12: 720183. Published online 2021 Sep 10. doi: 10.3389/fimmu.2021.720183 PMCID: PMC8461307

   

Antibody Response to mRNA Vaccines against SARS-CoV-2 with Chronic Kidney Disease, Hemodialysis, and after Kidney Transplantation

Lukas Buchwinkler, Claire Anne Solagna, Janosch Messner, Markus Pirklbauer, Michael Rudnicki, Gert Mayer, Julia Kerschbaum

J Clin Med. 2022 Jan; 11(1): 148. Published online 2021 Dec 28. doi: 10.3390/jcm11010148 PMCID: PMC8745313

  

Human Complement C4B Allotypes and Deficiencies in Selected Cases With Autoimmune Diseases

Danlei Zhou, Michael Rudnicki, Gilbert T. Chua, Simon K. Lawrance, Bi Zhou, Joanne L. Drew, Fatima Barbar-Smiley, Taylor K. Armstrong, Miranda E. Hilt, Daniel J. Birmingham, Werner Passler, Jeffrey J. Auletta, Sasigarn A. Bowden, Robert P. Hoffman, Yee Ling Wu, Wael N. Jarjour, Chi Chiu Mok, Stacy P. Ardoin, Yu Lung Lau, Chack Yung Yu

Front Immunol. 2021; 12: 739430. Published online 2021 Oct 26. doi: 10.3389/fimmu.2021.739430 PMCID: PMC8577214

 .

Coregulation Analysis of Mechanistic Biomarkers in Autosomal Dominant Polycystic Kidney Disease

Johannes Leierer, Paul Perco, Benedikt Hofer, Susanne Eder, Alexander Dzien, Julia Kerschbaum, Michael Rudnicki, Gert Mayer

Int J Mol Sci. 2021 Jul; 22(13): 6885. Published online 2021 Jun 26. doi: 10.3390/ijms22136885 PMCID: PMC8269435

  

 

Acetylation of PAX7 controls muscle stem cell self-renewal and differentiation potential in mice

Marie-Claude Sincennes, Caroline E. Brun, Alexander Y. T. Lin, Tabitha Rosembert, David Datzkiw, John Saber, Hong Ming, Yoh-ichi Kawabe, Michael A. Rudnicki

Nat Commun. 2021; 12: 3253. Published online 2021 May 31. doi: 10.1038/s41467-021-23577-z PMCID: PMC8167170

 

STAT1 potentiates oxidative stress revealing a targetable vulnerability that increases phenformin efficacy in breast cancer

Stephanie P. Totten, Young Kyuen Im, Eduardo Cepeda Cañedo, Ouafa Najyb, Alice Nguyen, Steven Hébert, Ryuhjin Ahn, Kyle Lewis, Benjamin Lebeau, Rachel La Selva, Valérie Sabourin, Constanza Martínez, Paul Savage, Hellen Kuasne, Daina Avizonis, Nancy Santos Martínez, Catherine Chabot, Adriana Aguilar-Mahecha, Marie-Line Goulet, Matthew Dankner, Michael Witcher, Kevin Petrecca, Mark Basik, Michael Pollak, Ivan Topisirovic, Rongtuan Lin, Peter M. Siegel, Claudia L. Kleinman, Morag Park, Julie St-Pierre, Josie Ursini-Siegel

Nat Commun. 2021; 12: 3299. Published online 2021 Jun 3. doi: 10.1038/s41467-021-23396-2 PMCID: PMC8175605

  

Resistance to different anthracycline chemotherapeutics elicits distinct and actionable primary metabolic dependencies in breast cancer

Shawn McGuirk, Yannick Audet-Delage, Matthew G Annis, Yibo Xue, Mathieu Vernier, Kaiqiong Zhao, Catherine St-Louis, Lucía Minarrieta, David A Patten, Geneviève Morin, Celia MT Greenwood, Vincent Giguère, Sidong Huang, Peter M Siegel, Julie St-Pierre

eLife. 2021; 10: e65150. Published online 2021 Jun 28. doi: 10.7554/eLife.65150 PMCID: PMC8238502

  

Perturbations of cancer cell metabolism by the antidiabetic drug canagliflozin

David Papadopoli, Oro Uchenunu, Ranveer Palia, Nabila Chekkal, Laura Hulea, Ivan Topisirovic, Michael Pollak, Julie St-Pierre

Neoplasia. 2021 Apr; 23(4): 391–399. Published online 2021 Mar 27. doi: 10.1016/j.neo.2021.02.003 PMCID: PMC8027095

  

Glycomacropeptide for Management of Insulin Resistance and Liver Metabolic Perturbations

Mathilde Foisy Sauvé, Francis Feldman, Mireille Koudoufio, Nour-El-Houda Ould-Chikh, Lena Ahmarani, Alain Sane, Thierry N’Timbane, Ramy El-Jalbout, Nathalie Patey, Schohraya Spahis, Alain Stintzi, Edgard Delvin, Emile Levy

Biomedicines. 2021 Sep; 9(9): 1140. Published online 2021 Sep 2. doi: 10.3390/biomedicines9091140 PMCID: PMC8469639

Factors contributing to fidelity in a pilot trial of individualized resistant starches for pediatric inflammatory bowel disease: a fidelity study protocol

Gisell Castillo, David R. Mack, Manoj M. Lalu, Ruth Singleton, Dean A. Fergusson, Alain Stintzi, Megan Harrison, Justin Presseau Pilot Feasibility Stud. 2021; 7: 75. Published online 2021 Mar 19. doi: 10.1186/s40814-021-00815-1 PMCID: PMC7976693

  

Oligosaccharides and Microbiota in Human Milk Are Interrelated at 3 Months Postpartum in a Cohort of Women with a High Prevalence of Gestational Impaired Glucose Tolerance

Lauren LeMay-Nedjelski, Chloe Yonemitsu, Michelle R Asbury, James Butcher, Sylvia H Ley, Anthony J Hanley, Alex Kiss, Sharon Unger, Julia K Copeland, Pauline W Wang, Alain Stintzi, Lars Bode, Deborah L O'Connor

J Nutr. 2021 Nov; 151(11): 3431–3441. Published online 2021 Sep 11. doi: 10.1093/jn/nxab270 PMCID: PMC8562078

 

 Reduced Infection Efficiency of Phage NCTC 12673 on Non-Motile Campylobacter jejuni Strains Is Related to Oxidative Stress

Jessica C. Sacher, Muhammad Afzal Javed, Clay S. Crippen, James Butcher, Annika Flint, Alain Stintzi, Christine M. Szymanski

Viruses. 2021 Oct; 13(10): 1955. Published online 2021 Sep 29. doi: 10.3390/v13101955 PMCID: PMC8540345

 

 Critical appraisal of the mechanisms of gastrointestinal and hepatobiliary infection by COVID-19

Emile Levy, Alain Stintzi, Albert Cohen, Yves Desjardins, André Marette, Schohraya Spahis

Am J Physiol Gastrointest Liver Physiol. 2021 Aug 1; 321(2): G99–G112. Published online 2021 May 19. doi: 10.1152/ajpgi.00106.2021 PMCID: PMC8289353

 

 Resistant starch, microbiome, and precision modulation

Peter A. Dobranowski, Alain Stintzi

Gut Microbes. 2021; 13(1): 1926842. Published online 2021 Jul 18. doi: 10.1080/19490976.2021.1926842 PMCID: PMC8288039

 Expansion microscopy-based imaging of nuclear structures in cultured cells

Antoine Gaudreau-Lapierre, Kirk Mulatz, Jean-Claude Béïque, Laura Trinkle-Mulcahy

STAR Protoc. 2021 Sep 17; 2(3): 100630. Published online 2021 Jun 26. doi: 10.1016/j.xpro.2021.100630 PMCID: PMC8243706

 

 DNA Based Vaccine Expressing SARS-CoV-2 Spike-CD40L Fusion Protein Confers Protection Against Challenge in a Syrian Hamster Model

Levi A. Tamming, Diana Duque, Anh Tran, Wanyue Zhang, Annabelle Pfeifle, Emmanuel Laryea, Jianguo Wu, Sathya N. Thulasi Raman, Caroline Gravel, Marsha S. Russell, Anwar M. Hashem, Reem M. Alsulaiman, Rowa Y. Alhabbab, Jun Gao, David Safronetz, Jingxin Cao, Lisheng Wang, Wangxue Chen, Michael J. W. Johnston, Simon Sauve, Michael Rosu-Myles, Xuguang Li

Front Immunol. 2021; 12: 785349. Published online 2022 Jan 12. doi: 10.3389/fimmu.2021.785349 PMCID: PMC8789660

 

 

Serum Untargeted UHPLC-HRMS-Based Lipidomics to Discover the Potential Biomarker of Colorectal Advanced Adenoma

Yifan Zhu, Lisheng Wang, Yanying Nong, Yunxiao Liang, Zongsheng Huang, Pingchuan Zhu, Qisong Zhang

Cancer Manag Res. 2021; 13: 8865–8878. Published online 2021 Nov 26. doi: 10.2147/CMAR.S336322 PMCID: PMC8632617

 

Single Immunization of a Vaccine Vectored by a Novel Recombinant Vaccinia Virus Affords Effective Protection Against Respiratory Syncytial Virus Infection in Cotton Rats

Marsha S. Russell, Sathya N. Thulasi Raman, Caroline Gravel, Wanyue Zhang, Annabelle Pfeifle, Wangxue Chen, Gary Van Domselaar, David Safronetz, Michael Johnston, Simon Sauve, Lisheng Wang, Michael Rosu-Myles, Jingxin Cao, Xuguang Li

Front Immunol. 2021; 12: 747866. Published online 2021 Sep 17. doi: 10.3389/fimmu.2021.747866 PMCID: PMC8484905

 

 Carbon Material Based Electrochemical Immunosensor for Gastric Cancer Markers Detection

Zhuliang Zhang, Minsi Peng, Defeng Li, Jun Yao, Yingxue Li, Benhua Wu, Lisheng Wang, Zhenglei Xu

Front Chem. 2021; 9: 736271. Published online 2021 Aug 31. doi: 10.3389/fchem.2021.736271 PMCID: PMC8438142

 

 Graphene-Assisted Electrochemical Sensor for Detection of Pancreatic Cancer Markers

Zhenglei Xu, Minsi Peng, Zhuliang Zhang, Haotian Zeng, Ruiyue Shi, Xiaoxin Ma, Lisheng Wang, Bihong Liao

Front Chem. 2021; 9: 733371. Published online 2021 Aug 19. doi: 10.3389/fchem.2021.733371 PMCID: PMC8416602

 

 Hollow-fiber bioreactor production of extracellular vesicles from human bone marrow mesenchymal stromal cells yields nanovesicles that mirrors the immuno-modulatory antigenic signature of the producer cell

Jonathan Gobin, Gauri Muradia, Jelica Mehic, Carole Westwood, Lauren Couvrette, Andrew Stalker, Stewart Bigelow, Christian C. Luebbert, Frédéric St-Denis Bissonnette, Michael J. W. Johnston, Simon Sauvé, Roger Y. Tam, Lisheng Wang, Michael Rosu-Myles, Jessie R. Lavoie

Stem Cell Res Ther. 2021; 12: 127. Published online 2021 Feb 12. doi: 10.1186/s13287-021-02190-3 PMCID: PMC7880218

 

Long noncoding RNA KIF9-AS1 promotes cell apoptosis by targeting the microRNA-148a-3p/suppressor of cytokine signaling axis in inflammatory bowel disease

Jun Yao, Ruoyu Gao, Minghan Luo, Defeng Li, Liliangzi Guo, Zichao Yu, Feng Xiong, Cheng Wei, Benhua Wu, Zhenglei Xu, Dingguo Zhang, Jianyao Wang, Lisheng Wang

Eur J Gastroenterol Hepatol. 2021 Dec; 33(Suppl 1): e922–e932. Published online 2021 Nov 8. doi: 10.1097/MEG.0000000000002309 PMCID: PMC8734634

 

Identification of Active Ingredients of Huangqi Guizhi Wuwu Decoction for Promoting Nerve Function Recovery After Ischemic Stroke Using HT22 Live-Cell-Based Affinity Chromatography Combined with HPLC-MS/MS

Yingying He, Haozhen Zheng, Lanying Zhong, Nijun Zhong, Guiqing Wen, Lisheng Wang, Ying Zhang

Drug Des Devel Ther. 2021; 15: 5165–5178. Published online 2021 Dec 30. doi: 10.2147/DDDT.S333418 PMCID: PMC8722572

 

COVID-MTL: Multitask learning with Shift3D and random-weighted loss for COVID-19 diagnosis and severity assessment

Guoqing Bao, Huai Chen, Tongliang Liu, Guanzhong Gong, Yong Yin, Lisheng Wang, Xiuying Wang

Pattern Recognit. 2022 Apr; 124: 108499. Published online 2021 Dec 12. doi: 10.1016/j.patcog.2021.108499 PMCID: PMC8666107

 

Synthetic vaccine affords full protection to mice against lethal challenge of influenza B virus of both genetic lineages

Caroline Gravel, Abenaya Muralidharan, Amparo Duran, Adrian Zetner, Annabelle Pfeifle, Wanyue Zhang, Anwar Hashem, Levi Tamming, Aaron Farnsworth, Hugues Loemba, Wangxue Chen, Florian Krammer, David Safronetz, Jingxin Cao, Lisheng Wang, Simon Sauve, Michael Rosu-Myles, Gary Van Domselaar, Xuguang Li

iScience. 2021 Nov 19; 24(11): 103328. Published online 2021 Oct 21. doi: 10.1016/j.isci.2021.103328 PMCID: PMC8586812

 

 Quantitative Prediction of Microsatellite Instability in Colorectal Cancer With Preoperative PET/CT-Based Radiomics

Jiaru Li, Ziyi Yang, Bowen Xin, Yichao Hao, Lisheng Wang, Shaoli Song, Junyan Xu, Xiuying Wang

Front Oncol. 2021; 11: 702055. Published online 2021 Jul 22. doi: 10.3389/fonc.2021.702055 PMCID: PMC8339969

 

Correction to: Automatic identification of myopic maculopathy related imaging features in optic disc region via machine learning methods

Yuchen Du, Qiuying Chen, Ying Fan, Jianfeng Zhu, Jiangnan He, Haidong Zou, Dazhen Sun, Bowen Xin, David Feng, Michael Fulham, Xiuying Wang, Lisheng Wang, Xun Xu

J Transl Med. 2021; 19: 203. Published online 2021 May 11. doi: 10.1186/s12967-021-02874-7  Corrects: J Transl Med. 2021; 19: 167. PMCID: PMC8114694

Expression of Nutrient Transporters on NK Cells During Murine Cytomegalovirus Infection Is MyD88-Dependent

Abrar Ul Haq Khan, Saeedah Musaed Almutairi, Alaa Kassim Ali, Rosalba Salcedo, C. Andrew Stewart, Lisheng Wang, Seung-Hwan Lee Front Immunol. 2021; 12: 654225. Published online 2021 May 3. doi: 10.3389/fimmu.2021.654225 PMCID: PMC8177011

 Imaging Features by Machine Learning for Quantification of Optic Disc Changes and Impact on Choroidal Thickness in Young Myopic Patients

Dandan Sun, Yuchen Du, Qiuying Chen, Luyao Ye, Huai Chen, Menghan Li, Jiangnan He, Jianfeng Zhu, Lisheng Wang, Ying Fan, Xun Xu

Front Med (Lausanne) 2021; 8: 657566. Published online 2021 Apr 29. doi: 10.3389/fmed.2021.657566 PMCID: PMC8116583

 

Post-Alignment Adjustment and Its Automation

Xuhua Xia

Genes (Basel) 2021 Nov; 12(11): 1809. Published online 2021 Nov 18. doi: 10.3390/genes12111809 PMCID: PMC8623120

 

Detailed Dissection and Critical Evaluation of the Pfizer/BioNTech and Moderna mRNA Vaccines

Xuhua Xia

Vaccines (Basel) 2021 Jul; 9(7): 734. Published online 2021 Jul 3. doi: 10.3390/vaccines9070734 PMCID: PMC8310186

 Applications of Protein Secondary Structure Algorithms in SARS-CoV-2 Research

Alibek Kruglikov, Mohan Rakesh, Yulong Wei, Xuhua Xia

J Proteome Res. 2021 Mar 5; 20(3): 1457–1463. Published online 2021 Feb 22. doi: 10.1021/acs.jproteome.0c00734 PMCID: PMC7927282

 

Author Correction: Predicting mammalian species at risk of being infected by SARS-CoV-2 from an ACE2 perspective

Yulong Wei, Parisa Aris, Heba Farookhi, Xuhua Xia

Sci Rep. 2021; 11: 22016. Published online 2021 Nov 4. doi: 10.1038/s41598-021-01576-w

Corrects: Sci Rep. 2021; 11: 1702. PMCID: PMC8567729

  

Dating the Common Ancestor from an NCBI Tree of 83688 High-Quality and Full-Length SARS-CoV-2 Genomes

Xuhua Xia

Viruses. 2021 Sep; 13(9): 1790. Published online 2021 Sep 8. doi: 10.3390/v13091790 PMCID: PMC8472983

 

 Does Saccharomyces cerevisiae Require Specific Post-Translational Silencing against Leaky Translation of Hac1up?

Ali Tehfe, Talia Roseshter, Yulong Wei, Xuhua Xia

Microorganisms. 2021 Mar; 9(3): 620. Published online 2021 Mar 17. doi: 10.3390/microorganisms9030620 PMCID: PMC8002603

 

 

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