Selected Publications

Daniel Figeys

1 Starr, A. E. et al. Proteomic and Metaproteomic Approaches to Understand Host-Microbe Interactions. Analytical chemistry, doi:10.1021/acs.analchem.7b04340 (2017).

2 Starr, A. E. et al. Proteomic analysis of ascending colon biopsies from a paediatric inflammatory bowel disease inception cohort identifies protein biomarkers that differentiate Crohn's disease from UC. Gut 66, 1573-1583, doi:10.1136/gutjnl-2015-310705 (2017).

3 Mottawea, W. et al. Altered intestinal microbiota-host mitochondria crosstalk in new onset Crohn's disease. Nat Commun7, 13419, doi:10.1038/ncomms13419 (2016).

4 Zhang, X. et al. Deep Metaproteomics Approach for the Study of Human Microbiomes. Analytical chemistry 89, 9407-9415, doi:10.1021/acs.analchem.7b02224 (2017).

5 Zhang, X. et al. MetaPro-IQ: a universal metaproteomic approach to studying human and mouse gut microbiota. Microbiome 4, 31, doi:10.1186/s40168-016-0176-z (2016).

6 Cheng, K. et al. MetaLab: an automated pipeline for metaproteomic data analysis. Microbiome 5, 157, doi:10.1186/s40168-017-0375-2 (2017).

7 Zhang, X. et al. In Vitro Metabolic Labeling of Intestinal Microbiota for Quantitative Metaproteomics. Analytical chemistry88, 6120-6125, doi:10.1021/acs.analchem.6b01412 (2016).

8 Li, L. et al. Evaluating in Vitro Culture Medium of Gut Microbiome with Orthogonal Experimental Design and a Metaproteomics Approach. Journal of Proteome Research, doi:10.1021/acs.jproteome.7b00461 (2017).

9 Chiang, C. K. et al. Phosphoproteome Profiling Reveals Circadian Clock Regulation of Posttranslational Modifications in the Murine Hippocampus. Front Neurol 8, 110, doi:10.3389/fneur.2017.00110 (2017).

10 Chiang, C. K. et al. The proteomic landscape of the suprachiasmatic nucleus clock reveals large-scale coordination of key biological processes. PLoS Genet 10, e1004695, doi:10.1371/journal.pgen.1004695 (2014).

11 Starr, A. E. et al. beta-Estradiol Results in a PCSK9-Dependent Increase in LDLR Levels in Human Hepatic HuH7 Cells. The FEBS journal, doi:10.1111/febs.13309 (2015).

12 Denis, N. et al. Quantitative proteomic analysis of PCSK9 gain of function in human hepatic HuH7 cells. J Proteome Res10, 2011-2026, doi:10.1021/pr2000072 (2011).

13 Chen, R., Zou, H. & Figeys, D. Detergent-Assisted Glycoprotein Capture: A Versatile Tool for In-Depth N-Glycoproteome Analysis. J Proteome Res 15, 2080-2086, doi:10.1021/acs.jproteome.6b00056 (2016).

14 Chen, R., Cheng, K., Ning, Z. & Figeys, D. N-Glycopeptide Reduction with Exoglycosidases Enables Accurate Characterization of Site-Specific N-Glycosylation. Analytical chemistry 88, 11837-11843, doi:10.1021/acs.analchem.6b03531 (2016).

15 Ning, Z. et al. A charge-suppressing strategy for probing protein methylation. Chem Commun (Camb) 52, 5474-5477, doi:10.1039/c6cc00814c (2016).

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